Projects


Projects

SATU Joint Research Scheme (JRS) -- May-Dec, 2020
Error Resilient Sample Preparation with Flow-based Lab-on-a-Chip
PI: Sukanta Bhattacharjee
Co-PI: Prof. Tsung-Yi Ho, Dept. of CSE, National Tsing Hua University, Taiwan

SATU Joint Research Scheme (JRS) -- May-Dec, 2020
A Software-Programmable Microfluidic Device for Automated 3D Cancer Drug Screening
PI: Prof. Ting-Yuan Tu, Dept. of Biomedical Engineering, National Cheng Kung University, Taiwan
Co-PI: Sukanta Bhattacharjee
Co-PI: Prof. Sudip Roy, Dept of CSE, IIT Roorkee, India
Co-PI: Dr. Thamil Selvee Ramasamy, Dept. of Molecular Medicine, Faculty of Medicine, University of Malaya, Malaesiya

Publications


Book

S. Bhattacharjee, B. B. Bhattacharya, and K. Chakrabarty, Algorithms for Sample Preparation with Microfluidic Lab-on-Chip, River Publisher Series in Biomedical Engineering , February 2019.

Journals

S. Sofela, S. Sahloul, S. Bhattacharjee, A. Bose, U. Usman, and Y. A. Song, Quantitative Fluorescence Imaging of Mitochondria in Body Wall Muscles of C. Elegans under Hyperglycemic Conditions Using a Microfluidic Chip, Integrative Biology, Oxford University Press, pp. 150-160, June 2020.
M. Shayan, S. Bhattacharjee, R. Wille, K. Chakrabarty, and R. Karri, How Secure are Checkpoint-based Defenses in Digital Microfluidic Biochips?, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, pp. 1-1, April 2020 (early access).
M. Shayan, T.-C. Liang, S. Bhattacharjee, K. Chakrabarty, and R. Karri, Towards Secure Checkpointing for Micro-Electrode-Dot-Array Biochips, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, pp. 1-1, March 2020 (early access).
S. Bhattacharjee, R. Wille, J.-D. Huang, and B. B. Bhattacharya, Storage-Aware Algorithms for Dilution and Mixture Preparation with Flow-Based Lab-on-Chip, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, pp. 816-829, April 2020.
M. Shayan, S. Bhattacharjee, J. Tang, K. Chakrabarty, and R. Karri, Microfluidic Fully-Programmable-Valve-Array Biochips, IEEE Transaction on Very Large Scale Integration Systems, pp. 1-1, December, 2019 (Early access).
S. Bhattacharjee, J. Tang, S. Poddar, M. Ibrahim, R. Karri, and K. Chakrabarty, Bio-chemical Assay Locking to Thwart Bio-IP Theft, ACM Transaction on Design Automation of Electronic Systems, pp. 5:1-20, November, 2019.
S. Bhattacharjee, A. Banerjee, T.-Y. Ho, K. Chakrabarty, and B. B. Bhattacharya, Efficient Generation of Dilution Gradients with Digital Microfluidic Biochips, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, pp. 874-887, May 2019.
M. Shayan, S. Bhattacharjee, J. Tang, K. Chakrabarty, and R. Karri, Bio-protocol Watermarking on Digital Microfluidic Biochips, IEEE Transaction on Information Forensics and Security, pp. 2901-2915, March, 2019.
S. Poddar, S. Bhattacharjee, S. C. Nandy, K. Chakrabarty, and B. B. Bhattacharya, Optimization of Multi-Target Sample Preparation On-Demand with Digital Microfluidic Biochips, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, pp. 253-266, May 2018.
S. Bhattacharjee, D. Mitra, and B. B. Bhattacharya, Robust In-field Testing of Digital Microfluidic Biochips, ACM Journal on Emerging Technologies in Computing, pp. 5:1-17, April 2018.
S. Bhattacharjee, Y.-L. Chen, J.-D. Huang, and B. B. Bhattacharya, Concentration-Resilient Mixture Preparation with Digital Microfluidic Lab-on-Chip, ACM Transactions on Embedded Computing Systems, pp. 49:1-12, January 2018.
S. Bhattacharjee, S. Poddar, S. Roy, J.-D. Huang, and B. B. Bhattacharya, Dilution and Mixing Algorithms for Flow-Based Microfluidic Biochips, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, pp. 614-627, April 2017.
S. Bhattacharjee, S. Chatterjee, A. Banerjee, T.-Y Ho., K. Chakrabarty, and B. B. Bhattachary, Adaptation of Biochemical Protocols to Handle Technology-Change for Digital Microfluidics, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, pp. 370-383, March 2017.
D. Mitra, S. Roy, S. Bhattacharjee, K. Chakrabarty, and B. B. Bhattacharya, On-Chip Sample Preparation for Multiple Targets using Digital Microfluidics, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, pp. 1131-1144, August 2014.
S. Bhattacharjee, A. Banerjee, and B. B. Bhattacharya, Sample Preparation with Multiple Dilutions on Digital Microfluidic Biochips, IET Computers & Digital Techniques, pp. 49-58, January 2014.

 

Conferences

 

T. Banerjee, S. Poddar, S. Bhattacharjee, Y. A. Song, A. Orozaliev, and B. B. Bhattacharya, Sample Preparation with Free-Flowing Biochips Using Microfluidic Binary-Tree Network, International Symposium on Circuits & Systems (ISCAS), pp. 1-1, 2020 (to appear).
M. Shayan, S. Bhattacharjee, Y. A. Song, K. Chakrabarty, and R. Karri, Microfluidic Trojan Design in Flow-based Biochips, Design, Automation and Test in Europe (DATE), pp. 1037-1042, 2020.
G. Choudhary, S. Pal, D. Kundu, S. Bhattacharjee, S. Yamashita, B. Li, U. Schlichtmann, and S. Roy, Transport-Free Module Binding for Sample Preparation using Microfluidic Fully Programmable Valve Arrays, Design, Automation and Test in Europe (DATE), pp. 1335-1338, 2020.
M. Shayan, S. Bhattacharjee, Y. A. Song, K. Chakrabarty, and R. Karri, Can Multi-Layer Microfluidics Aid Bio-Intellectual Property Protection? , International Symposium on On-line Test and Robust System Design (IOLTS), pp. 151-154, 2019.
M. Shayan, S. Bhattacharjee, Y. A. Song, K. Chakrabarty, and R. Karri, Security Assessment of Microfluidic Immunoassays , International Conference on Omni-layer Intelligent Systems (COINS) , pp. 217-222, 2019.
M. Shayan, S. Bhattacharjee, Y. A. Song, K. Chakrabarty, and R. Karri, Desieve the Attacker: Thwarting IP Theft in Sieve-Valve-based Biochips , Design, Automation and Test in Europe (DATE) , pp. 210-215, 2019.
M. Shayan, S. Bhattacharjee, Y. A. Song, K. Chakrabarty, and R. Karri, Security Assessment of Microfluidic Fully-Programmable-Valve-Array Biochips , International Conference on VLSI Design (VLSID) , pp. 197-202, 2019.
S. Saha, D. Kundu, S. Roy, S. Bhattacharjee, K. Chakrabarty, P. P. Chakrabarti, and B. B. Bhattacharya, Factorization Based Dilution of Biochemical Fluids with Micro-Electrode-Dot-Array Biochips , Asia and South Pacific Design Automation Conference (ASPDAC) , pp. 462-467, 2019.
M. Shayan, S. Bhattacharjee, T.-C. Liang, J. Tang, K. Chakrabarty, and R. Karri, Shadow Attacks on MEDA Biochips , International Conference on Computer-Aided Design (ICCAD) , pp. 73:1-8, 2018.
S. Bhattacharjee, J. Tang, M. Ibrahim, K. Chakrabarty, and R. Karri, Locking of Biochemical Assays for Digital Microfluidic Biochips , European Test Symposium (ETS) , pp. 1-6, 2018.
S. Bhattacharjee, R. Wille, J.-D. Huang, and B. B. Bhattacharya, Storage-Aware Sample Preparation Using Flow-Based Microfluidic Labs-on-Chip , Design, Automation and Test in Europe (DATE) , pp. 1399-1404, 2018.
B. B. Bhattacharya, S. Roy, and S. Bhattacharjee, Algorithmic Challenges in Digital Microfluidic Biochips: Protocols, Design, and Test , International Conference on Applied Algorithms (ICAA) , pp. 1-16, 2014.
S. Bhattacharjee, A. Banerjee, K. Chakrabarty, and B. B. Bhattacharya, Correctness Checking of Bio-chemical Protocol Realizations on a Digital Microfluidic Biochip , International Conference on VLSI Design (VLSID) , pp. 504-509, 2014.
S. Bhattacharjee, A. Banerjee, T.-Y. Ho, K. Chakrabarty, and B. B. Bhattacharya, On Producing Linear Dilution Gradient of a Sample with a Digital Microfluidic Biochip , International Symposium on Electronic System Design (ISED) , pp. 77-81, 2013.
S. Bhattacharjee, A. Banerjee, T.-Y. Ho, K. Chakrabarty, and B. B. Bhattacharya, Eco-friendly Sample Preparation with Concentration Gradient on a Digital Microfluidic Biochip , International Conference on Eco-friendly Computing and Communication Systems (ICECCS) , Advances in Energy Aware Computing and Communication Systems, McGrawHill, pp. 1-11, 2013.

ISBN: 9-35-134332-4

S. Bhattacharjee, A. Banerjee, and B. B. Bhattacharya, Multiple Dilution Sample Preparation Using Digital Microfluidic Biochips , International Symposium on Electronic System Design (ISED) , pp. 188-192, 2012.

Professional Services

 

AsianHost 2020, Space 2020
IEEE TCAD, ACM TODAES, JETC, IET-ell-letter
ICECCS, VDAT, ISED, ISVLSI, ATS, ITC-ASIA, DATE, HOST, ETS

Talks / Tutorials

 

Invited talk on "Design Automation Algorithms for Sample Preparation with Microfluidic Biochips".

CIT-Kokrajhar, Kokrajhar, Assam   Feb 21, 2020

Invited talk on "Towards Secure and Trustworthy Microfludic Biochips".

ATS, Kolkata, India   Dec. 10-13, 2019

Invited talk on "Sample Preparation with Microfluidic Lab-on-Chip".

IIT Guwahati, India   Feb. 12, 2019

Visited Center for Cyber Security, Tandon school of Engg.

New York University, USA   Nov. 8-15, 2018

Plenary talk on "Locking of Biochemical Assays for Digital Microfluidic Biochips".

ETS, Germany   May 28-Jun. 1, 2018

Seminar talk on "Dilution and Mixing Algorithms for Flow-Based Microfluidic Biochips", in Center for Cyber Security.

New York University Abu Dhabi, UAE   Oct. 16, 2018

Invited talk on "Adaptation of Biochemical Protocols to Handle Technology-Change for Digital Microfluidics".

IIT Roorkee, India   Apr. 25, 2017

Participated in PhD Forum at VLSI Design.

Kolkata, India   Jan. 4-8, 2016

Visited Dept. of ECE.

Duke University, USA   Nov. 8-20, 2014

Participated ACM student research competetion at ICCAD.

ICCAD, San Jose, USA   Nov. 3-7, 2014

Lab session on "Simulation and Verification", in Summer School on Fundamentals of Digital Design Automation.

ISI, Kolkata, India   Jul. 22-26, 2014

Presented tutorial on "Automatic Sample Preparation and Validation of Biochemical Assays on a Microfluidic Lab-on-a-Chip".

VDAT, Coimbatore, India   Jul. 16-18, 2014

Presented tutorial on "Integer Linear Programming and its Applications"in the North-East Workshop on Algorithms for Mobile and Pervasive computing.

NIT, Agartala, India   Feb. 24-26, 2014

Plenary talk on "Correctness Checking of Bio-chemical Protocol Realizations on a Digital Microfluidic Biochip".

VLSI Design, Mumbai, India   Jan. 5-9, 2014

Plenary talk on "On Producing Linear Dilution Gradient of a Sample with a Digital Microfluidic Biochip".

ISED, Singapore   Dec. 12-13, 2013

Plenary talk on "Eco-friendly Sample Preparation with Concentration Gradient on a Digital Microfluidic Biochip".

ICECCS, Himachal Pradesh, India   Oct. 17-19, 2013

Plenary talk on "Multiple Dilution Sample Preparation Using Digital Microfluidic Biochips".

ISED, Kolkata, India   Dec. 19-22, 2012